Table 1 Summary of influenza A viruses detected from mink. All mink influenza viral sequences were obtained from GISAID. Most viruses contained entire viral genomic sequence with 8 segments, while some viruses had partial sequences available. Most viral lineage was defined using the full HA sequence of each mink virus to determine the phylogenic relationship with reference sequences according to WHO guideline. Due to unavailability of some viral sequences of PB2 gene, adaptive mutations at 627 and 701 amino acid position of these virus can not be examined and analyzed
From: Mink infection with influenza A viruses: an ignored intermediate host?
Strain | Subtype | Regiona | Seq availabilityb | Most related viral lineagec | PB2 mutation | |
|---|---|---|---|---|---|---|
627 | 701 | |||||
A/mink/Sweden/E12665/1984 | H10N4 | EU | NA | Wild bird H10 virus | -d | – |
A/mink/Sweden/V907/2006 | H5N1 | EU | ALL | QH-like HPAIV H5/cl.2.2 | K | D |
A/mink/Nova Scotia/1055488/2007 | H3N2 | NA | ALL | Triple reassortant swine H3 | E | D |
A/mink/Nova Scotia/1265707/2010 | H3N2 | NA | HA/M | Hybrid of swine H3 and H1N1/pdm | – | – |
A/mink/Iowa/30943/2010 | H1N2 | NA | M | Natural occuring H1N2 | – | – |
A/Mink/Netherlands/11009347/2011 | H1N1 | EU | NA | H1N1/pdm | – | – |
A/mink/Wisconsin/31512–7/2012 | H3N2 | NA | ALL | Local swine H3N2 virus | E | D |
A/mink/South Dakota/A01279427/2012 | H1N1 | NA | ALL | Local swine H1N1 virus | E | D |
A/mink/Shandong/F6/2013 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | K | D |
A/mink/Shandong/F10/2013 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | K | D |
A/mink/China/01/2014 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/China/02/2014 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | D |
A/mink/Shandong/WM01/2014 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/China/XB/2015 | H5N1 | China | ALL | Local avian H5N1 virus/cl.2.3.2.1e | E | D |
A/mink/China/G/2015 | H5N1 | China | ALL | Local avian H5N1 virus/cl.2.3.2.1b | E | D |
A/mink/Shandong/Z1/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/Shandong/Z2/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/Shandong/Z3/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/Shandong/Z4/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/Shandong/Z5/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/Shandong/Z6/2015 | H9N2 | China | ALL | Local avian H9N2 virus/Y280 | E | N |
A/mink/China/CY/2017 | H5N1 | China | ALL | Local avian H5N1 virus/cl.2.3.2.1e | E | D |
A/mink/China/CY1/2017 | H5N1 | China | HA/NP/NA | Local avian H5N1 virus/cl.2.3.2.1e | – | – |
A/mink/China/CY2/2017 | H5N1 | China | HA/NP/NA | Local avian H5N1 virus/cl.2.3.2.1e | – | – |
A/mink/China/CY3/2017 | H5N1 | China | HA/NP/NA | Local avian H5N1 virus/cl.2.3.2.1e | – | – |
A/mink/China/CY4/2017 | H5N1 | China | HA/NP/NA | Local avian H5N1 virus/cl.2.3.2.1e | – | – |
A/mink/Shandong/1121/2018 | H1N1 | China | ALL | Local swine H1N1 virus/EA-H1N1 | E | D |
A/mink/Eastern China/006/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | D |
A/mink/Eastern China/032/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | D |
A/mink/Northern China/110/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | D |
A/mink/Eastern China/149/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | N |
A/mink/Eastern China/528/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | N |
A/mink/Eastern China/0824/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | K | D |
A/mink/Eastern China/0712/2018 | H5N1 | China | ALL | Local avian H5N1 virus/cl.2.3.4.4 | E | D |
A/mink/Eastern China/571/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | D |
A/mink/Northern China/F0130m/2018 | H5N6 | China | N/M/NS | – | – | – |
A/mink/China/456/2018 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | E | D |
A/mink/Utah/19–015857-001/2019 | H1N1 | NA | ALL | H1N1/pdm | E | D |
A/mink/China/0509/2019 | H1N1 | China | ALL | H1N1/pdm | E | D |
A/mink/China/181/2019 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | K | D |
A/mink/China/183/2019 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | K | D |
A/mink/China/191/2019 | H5N6 | China | ALL | Local avian H5N6 virus/cl.2.3.4.4 | K | D |
A/mink/China/chick embryo/2020 | H9N2 | China | ALL | Local avian H9N2 virus/ Y280 | V | D |
A/mink/Spain/3691-8_22VIR10586–10/2022 | H5N1 | EU | ALL | Local avian H5N1 virus/cl.2.3.4.4 | E | D |
A/mink/Spain/3691-10_22VIR10586–11/2022 | H5N1 | EU | ALL | Local avian H5N1 virus/cl.2.3.4.4 | E | D |
A/mink/Spain/3691–2_22VIR10586–8/2022 | H5N1 | EU | ALL | Local avian H5N1 virus/cl.2.3.4.4 | E | D |
A/mink/Spain/3691–3_22VIR10586–9/2022 | H5N1 | EU | ALL | Local avian H5N1 virus/cl.2.3.4.4 | E | D |